commutazzio package

Subpackages

• commutazzio.compute package
  • Submodules
  • commutazzio.compute.commutative_grid_quiver module
    • CommutativeGrid2DQuiver
      • CommutativeGrid2DQuiver.plot()
    • CommutativeGridQuiver
      • CommutativeGridQuiver.attribute_sequence()
      • CommutativeGridQuiver.computePD()
      • CommutativeGridQuiver.multiplicity_zigzag()
      • CommutativeGridQuiver.plot()
    • longest_matching()
    • one_based_numbering()
  • commutazzio.compute.commutative_ladder_quiver module
    • CommutativeLadderQuiver
      • CommutativeLadderQuiver.filtration_input()
      • CommutativeLadderQuiver.info()
      • CommutativeLadderQuiver.multiplicity_computation()
      • CommutativeLadderQuiver.plot()
      • CommutativeLadderQuiver.tours_vector()
  • commutazzio.compute.compute_engine module
    • CLInvariants
      • CLInvariants.cPD_computation()
      • CLInvariants.cPDs
      • CLInvariants.decompositions_all
      • CLInvariants.delete_filtration_file()
      • CLInvariants.lower_sc_array()
      • CLInvariants.repr_generation()
      • CLInvariants.total_decomposition_computation()
      • CLInvariants.upper_sc_array()
  • commutazzio.compute.connected_persistence_diagram module
    • ConnectedPersistenceDiagram
      • ConnectedPersistenceDiagram.NodeToStr
      • ConnectedPersistenceDiagram.PathToStr
      • ConnectedPersistenceDiagram.clean_up
      • ConnectedPersistenceDiagram.complexes
      • ConnectedPersistenceDiagram.complexes_generator()
      • ConnectedPersistenceDiagram.compute_connecting_lines()
      • ConnectedPersistenceDiagram.compute_dec_obj()
      • ConnectedPersistenceDiagram.compute_dotdec()
      • ConnectedPersistenceDiagram.compute_plot_dots()
      • ConnectedPersistenceDiagram.d_ss
      • ConnectedPersistenceDiagram.dec
      • ConnectedPersistenceDiagram.deco()
      • ConnectedPersistenceDiagram.delt_ss
      • ConnectedPersistenceDiagram.dim
      • ConnectedPersistenceDiagram.dotdec
      • ConnectedPersistenceDiagram.dots
      • ConnectedPersistenceDiagram.fzz_barcode_compute_lower()
      • ConnectedPersistenceDiagram.fzz_barcode_compute_upper()
      • ConnectedPersistenceDiagram.fzz_compute_inside_loop_local_mp()
      • ConnectedPersistenceDiagram.indexAligner
      • ConnectedPersistenceDiagram.intv
      • ConnectedPersistenceDiagram.join_intv()
      • ConnectedPersistenceDiagram.ladder_length
      • ConnectedPersistenceDiagram.lines
      • ConnectedPersistenceDiagram.logging_memory_usage_of_attributes()
      • ConnectedPersistenceDiagram.m
      • ConnectedPersistenceDiagram.n
      • ConnectedPersistenceDiagram.node2str_generator()
      • ConnectedPersistenceDiagram.path2str_generator()
      • ConnectedPersistenceDiagram.plot_data
      • ConnectedPersistenceDiagram.plot_dots
      • ConnectedPersistenceDiagram.preprocess_filtration_values()
      • ConnectedPersistenceDiagram.times
      • ConnectedPersistenceDiagram.txf
      • ConnectedPersistenceDiagram.txf_basename_wo_ext
      • ConnectedPersistenceDiagram.txf_dir
      • ConnectedPersistenceDiagram.variables
      • ConnectedPersistenceDiagram.wake()
      • ConnectedPersistenceDiagram.write_list_of_lists_of_sets_to_file()
      • ConnectedPersistenceDiagram.write_node_to_str()
  • commutazzio.compute.courses module
    • courses_cl3()
    • courses_cl4()
    • read_numpy_array()
    • read_numpy_array_from_txt()
  • commutazzio.compute.decomposition_container module
    • Decomposition
      • Decomposition.dim
      • Decomposition.m
      • Decomposition.mult
      • Decomposition.nonzero_components
      • Decomposition.nonzero_nonintervals
      • Decomposition.pretty_print()
      • Decomposition.prime
      • Decomposition.statistics()
      • Decomposition.to_dict()
    • DecompositionCollection
      • DecompositionCollection.add()
      • DecompositionCollection.dim()
      • DecompositionCollection.mult()
      • DecompositionCollection.prime()
  • commutazzio.compute.precompute module
    • CommutativeGridPreCompute
      • CommutativeGridPreCompute.c_ss_initializer()
      • CommutativeGridPreCompute.cover_generator()
      • CommutativeGridPreCompute.get_intervals()
      • CommutativeGridPreCompute.get_variables()
      • CommutativeGridPreCompute.interval_generator()
      • CommutativeGridPreCompute.save_intv_to_file()
      • CommutativeGridPreCompute.save_variables_to_file()
  • Module contents
• commutazzio.filtration package
  • Submodules
  • commutazzio.filtration.clfiltration module
    • CLFiltration
      • CLFiltration.Epsilon
      • CLFiltration.dimension()
      • CLFiltration.from_database_item()
      • CLFiltration.get_filtration_as_a_nested_list()
      • CLFiltration.get_filtration_fv()
      • CLFiltration.get_filtration_with_custom_filtration_values()
      • CLFiltration.get_simplicial_complex()
      • CLFiltration.h_params
      • CLFiltration.incremental_filtration_creation()
      • CLFiltration.info_key_append()
      • CLFiltration.info_update()
      • CLFiltration.num_simplices()
      • CLFiltration.plot()
      • CLFiltration.random_cech_format_output_file()
      • CLFiltration.random_cech_format_output_list()
      • CLFiltration.resample_filtration()
      • CLFiltration.serialize()
      • CLFiltration.set_info()
      • CLFiltration.validation()
    • ZigzagFiltration
      • ZigzagFiltration.all_time_sequences()
  • commutazzio.filtration.database module
    • CLFiltrationDB
      • CLFiltrationDB.add_filtration()
      • CLFiltrationDB.close()
      • CLFiltrationDB.create_table()
      • CLFiltrationDB.get_all()
      • CLFiltrationDB.get_filtration_by_id()
      • CLFiltrationDB.reset_table_name_for_legacy()
  • commutazzio.filtration.points_to_clfiltration module
    • pointCloud2Filtration()
    • points_to_clfiltration()
    • points_to_clfiltration_chro()
    • random_vertical_removal_points_only()
  • commutazzio.filtration.simplex_tree module
    • SimplexTree
      • SimplexTree.Epsilon
      • SimplexTree.critical_radii()
      • SimplexTree.filtration_values
      • SimplexTree.from_point_cloud()
      • SimplexTree.from_random_point_cloud()
      • SimplexTree.insert()
      • SimplexTree.maximum_simplicial_complex
      • SimplexTree.ordered_simplices()
      • SimplexTree.prune_above_dimension()
      • SimplexTree.prune_above_filtration()
      • SimplexTree.to_custom_filtration_values()
      • SimplexTree.to_ordinal_number_indexing()
      • SimplexTree.truncation()
  • commutazzio.filtration.simplicial_complex module
    • SimplicialComplex
      • SimplicialComplex.add()
      • SimplicialComplex.betti_numbers()
      • SimplicialComplex.deleteOne()
      • SimplicialComplex.delete_simplices()
      • SimplicialComplex.dimension()
      • SimplicialComplex.dionysus_form()
      • SimplicialComplex.from_simplices()
      • SimplicialComplex.get_faces()
      • SimplicialComplex.info_node()
      • SimplicialComplex.is_subcomplex_of()
      • SimplicialComplex.issimplicialComplex()
      • SimplicialComplex.issuperset()
      • SimplicialComplex.maximum_simplices
      • SimplicialComplex.random_delete_vertices()
      • SimplicialComplex.removeOne()
      • SimplicialComplex.remove_simplices()
      • SimplicialComplex.sc
      • SimplicialComplex.simplexify()
      • SimplicialComplex.simplices
      • SimplicialComplex.vertices
  • Module contents
• commutazzio.non_intervals package
  • Submodules
  • commutazzio.non_intervals.reader module
    • NonIntervalCL4
      • NonIntervalCL4.df_repr
      • NonIntervalCL4.lower
      • NonIntervalCL4.upper
      • NonIntervalCL4.visualization()
      • NonIntervalCL4.write2file()
    • StatisticsNonIntervalsCL4
      • StatisticsNonIntervalsCL4.add_from_line()
      • StatisticsNonIntervalsCL4.bar_plot_plotly()
      • StatisticsNonIntervalsCL4.barchart()
      • StatisticsNonIntervalsCL4.data2df()
      • StatisticsNonIntervalsCL4.dim_counts()
  • Module contents
• commutazzio.persistence package
  • Submodules
  • commutazzio.persistence.PD_animation module
    • PD_animation()
  • commutazzio.persistence.format_conversion module
    • diagrams_d2g()
    • filtration_g2d()
  • commutazzio.persistence.pd_points3d module
    • PD_Points3D
      • PD_Points3D.diagram_multiplicity_count()
      • PD_Points3D.filtration()
      • PD_Points3D.info()
      • PD_Points3D.isclose()
      • PD_Points3D.omnifield_persistence_primes()
      • PD_Points3D.pd_formatter()
      • PD_Points3D.plot_0D()
      • PD_Points3D.plot_1D()
      • PD_Points3D.plot_2D()
      • PD_Points3D.plot_all()
    • pd_multiplicity
      • pd_multiplicity.birth
      • pd_multiplicity.count
      • pd_multiplicity.death
      • pd_multiplicity.dim
    • wasserstein_distance()
  • Module contents
• commutazzio.plot package
  • Submodules
  • commutazzio.plot.cl4_point_cloud_visualizers module
    • CechCL4Viz
      • CechCL4Viz.render_all()
    • ChroAlphaCL4Viz
      • ChroAlphaCL4Viz.get_edges()
      • ChroAlphaCL4Viz.get_n_simplices()
      • ChroAlphaCL4Viz.get_tetrahedra()
      • ChroAlphaCL4Viz.get_triangles()
      • ChroAlphaCL4Viz.plot_edges()
      • ChroAlphaCL4Viz.plot_points()
      • ChroAlphaCL4Viz.plot_tetrathedron()
      • ChroAlphaCL4Viz.plot_triangle()
      • ChroAlphaCL4Viz.render_all()
      • ChroAlphaCL4Viz.render_sc()
  • commutazzio.plot.colors_helper module
    • get_color()
    • get_continuous_color()
    • show_named_plotly_colours()
  • commutazzio.plot.plot_engine module
    • ComplementaryTrianglesPlot
      • ComplementaryTrianglesPlot.add_line()
      • ComplementaryTrianglesPlot.check_cdn_access()
      • ComplementaryTrianglesPlot.data_preprocessing_dots()
      • ComplementaryTrianglesPlot.data_preprocessing_lines()
      • ComplementaryTrianglesPlot.legend_grouping()
      • ComplementaryTrianglesPlot.line_chart()
      • ComplementaryTrianglesPlot.one_legend_in_each_group()
      • ComplementaryTrianglesPlot.render()
      • ComplementaryTrianglesPlot.render_and_export_figure()
      • ComplementaryTrianglesPlot.render_axes()
      • ComplementaryTrianglesPlot.render_general_layout()
      • ComplementaryTrianglesPlot.render_legend()
      • ComplementaryTrianglesPlot.render_ticks()
      • ComplementaryTrianglesPlot.ribbonise()
      • ComplementaryTrianglesPlot.scatter_chart()
      • ComplementaryTrianglesPlot.show()
  • commutazzio.plot.row_visualizer module
    • RowVisualizerChroAlpha
      • RowVisualizerChroAlpha.get_edges()
      • RowVisualizerChroAlpha.get_n_simplices()
      • RowVisualizerChroAlpha.get_triangles()
      • RowVisualizerChroAlpha.plot_edges()
      • RowVisualizerChroAlpha.plot_points()
      • RowVisualizerChroAlpha.plot_triangle()
      • RowVisualizerChroAlpha.render_all()
      • RowVisualizerChroAlpha.render_sc()
  • commutazzio.plot.simplicial_complex_2d module
    • SC2DViz
      • SC2DViz.CIRCUMFERENCE_COLOR
      • SC2DViz.CIRCUMFERENCE_WIDTH
      • SC2DViz.DISK_COLOR
      • SC2DViz.EDGE_COLOR
      • SC2DViz.EDGE_WIDTH
      • SC2DViz.EPSILON
      • SC2DViz.NUM_COLS
      • SC2DViz.PAPER_BGCOLOR
      • SC2DViz.PLOT_BGCOLOR
      • SC2DViz.POINT_COLOR
      • SC2DViz.POINT_SIZE
      • SC2DViz.TRIANGLE_COLOR
      • SC2DViz.add_circle()
      • SC2DViz.get_edges()
      • SC2DViz.get_n_simplices()
      • SC2DViz.get_points()
      • SC2DViz.get_triangles()
      • SC2DViz.plot_edges()
      • SC2DViz.plot_points()
      • SC2DViz.plot_triangle()
      • SC2DViz.plot_triangles()
      • SC2DViz.radii_critical()
      • SC2DViz.render_all()
      • SC2DViz.render_circles()
      • SC2DViz.render_sc()
  • Module contents
• commutazzio.random package
  • Submodules
  • commutazzio.random.db_conversion_utils module
    • collect_data_from_db_files()
    • sqlite_to_df_cl4_pc()
    • sqlite_to_df_cln_pc()
  • commutazzio.random.point_cloud_model module
    • RandomFiltrationPointCloudModel
    • join_and_unique()
  • Module contents
• commutazzio.statistics package
  • Submodules
  • commutazzio.statistics.aggregate_dimension module
  • commutazzio.statistics.non_interval_scores module
    • CL4_NIScores
      • CL4_NIScores.ns_const
      • CL4_NIScores.ns_logistic()
  • commutazzio.statistics.non_interval_scores_numba module
    • CL4_NIScores
      • CL4_NIScores.ns_const
      • CL4_NIScores.ns_logistic()
    • CLN_NIScores
      • CLN_NIScores.agg_total
      • CLN_NIScores.ns_c_prime
  • Module contents
• commutazzio.utils package
  • Submodules
  • commutazzio.utils.compressed_dict module
    • CompressedDict
    • CompressedDictManager
      • CompressedDictManager.CompressedDict()
    • compress()
  • commutazzio.utils.file_operations module
    • clean()
    • clean_all()
    • create_directory()
    • delete_file()
    • filename_logger()
    • filepath_generator()
    • pickle_load()
    • pickle_load_latest()
    • pickle_save()
    • read_data()
  • commutazzio.utils.joblib_progress module
    • tqdm_joblib()
  • commutazzio.utils.labelled_point_cloud module
    • attach_level()
  • commutazzio.utils.memory_tools module
    • print_memory_usage()
    • print_memory_usage_of_all_variables()
  • commutazzio.utils.radius_tools module
    • join_and_unique()
    • radii_generator()
  • commutazzio.utils.watch module
    • timeit()
  • Module contents

Module contents